The Subread package comprises a suite of software programs for
processing next-gen sequencing read data including:
Subread: a general-purpose read aligner which can align both
genomic DNA-seq and RNA-seq reads. It can also be used to
discover genomic mutations including short indels and structural
variants.
Subjunc: a read aligner developed for aligning RNA-seq reads
and for the detection of exon-exon junctions. Gene fusion events
can be detected as well.
featureCounts: a software program developed for counting
reads to genomic features such as genes, exons, promoters and
genomic bins.
Sublong: a long-read aligner that is designed based on
seed-and-vote.
exactSNP: a SNP caller that discovers SNPs by testing signals
against local background noises.
| OS | Architecture | Version |
|---|---|---|
| (none) |
Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.
The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.
Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.
Problem reports, updates or suggestions for this package should be reported with send-pr.