biology/py-macs2 - The NetBSD Packages Collection

Algorithm for identifying transcription factor binding sites 

MACS is a tool for chromatin immunoprecipitation (ChIP) sequence
analysis.  MACS empirically models the length of the sequenced ChIP
fragments, which tend to be shorter than sonication or library
construction size estimates, and uses it to improve the spatial
resolution of predicted binding sites.

Build dependencies

devel/py-cython devel/py-setuptools devel/py-build misc/py-installer pkgtools/mktools pkgtools/cwrappers

Runtime dependencies

math/py-numpy lang/python312 lang/python312 math/py-numpy

Binary packages

OSArchitectureVersion
NetBSD 10.0aarch64py310-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64py311-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64py312-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64py313-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64py310-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64py311-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64py312-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64ebpy310-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64ebpy311-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64ebpy312-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64ebpy313-macs2-2.2.9.1.tgz
NetBSD 10.0aarch64ebpy312-macs2-2.2.9.1nb1.tgz
NetBSD 10.0earmv7hfpy310-macs2-2.2.9.1.tgz
NetBSD 10.0earmv7hfpy311-macs2-2.2.9.1.tgz
NetBSD 10.0earmv7hfpy312-macs2-2.2.9.1.tgz
NetBSD 10.0earmv7hfpy310-macs2-2.2.9.1.tgz
NetBSD 10.0earmv7hfpy311-macs2-2.2.9.1.tgz
NetBSD 10.0earmv7hfpy312-macs2-2.2.9.1.tgz
NetBSD 10.0i386py310-macs2-2.2.9.1nb1.tgz
NetBSD 10.0i386py311-macs2-2.2.9.1nb1.tgz
NetBSD 10.0i386py312-macs2-2.2.9.1nb1.tgz
NetBSD 10.0i386py313-macs2-2.2.9.1nb1.tgz
NetBSD 10.0i386py310-macs2-2.2.9.1.tgz
NetBSD 10.0i386py311-macs2-2.2.9.1.tgz
NetBSD 10.0i386py312-macs2-2.2.9.1.tgz
NetBSD 10.0i386py310-macs2-2.2.9.1.tgz
NetBSD 10.0i386py311-macs2-2.2.9.1.tgz
NetBSD 10.0i386py312-macs2-2.2.9.1.tgz
NetBSD 10.0i386py313-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy310-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy311-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy312-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy39-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy310-macs2-2.2.8.tgz
NetBSD 10.0powerpcpy311-macs2-2.2.8.tgz
NetBSD 10.0powerpcpy38-macs2-2.2.8.tgz
NetBSD 10.0powerpcpy39-macs2-2.2.8.tgz
NetBSD 10.0powerpcpy310-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy311-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy312-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy39-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy310-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy311-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy312-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy39-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy310-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy311-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy312-macs2-2.2.9.1.tgz
NetBSD 10.0powerpcpy39-macs2-2.2.9.1.tgz
NetBSD 10.0sparc64py310-macs2-2.2.9.1.tgz
NetBSD 10.0sparc64py311-macs2-2.2.9.1.tgz
NetBSD 10.0sparc64py312-macs2-2.2.9.1.tgz
NetBSD 10.0sparc64py39-macs2-2.2.9.1.tgz
NetBSD 10.0sparc64py312-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py310-macs2-2.2.9.1nb1.tgz
NetBSD 10.0x86_64py311-macs2-2.2.9.1nb1.tgz
NetBSD 10.0x86_64py312-macs2-2.2.9.1nb1.tgz
NetBSD 10.0x86_64py313-macs2-2.2.9.1nb1.tgz
NetBSD 10.0x86_64py310-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py311-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py312-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py310-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py311-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py312-macs2-2.2.9.1.tgz
NetBSD 10.0x86_64py313-macs2-2.2.9.1.tgz
NetBSD 9.0i386py310-macs2-2.2.9.1nb1.tgz
NetBSD 9.0i386py311-macs2-2.2.9.1nb1.tgz
NetBSD 9.0i386py312-macs2-2.2.9.1nb1.tgz
NetBSD 9.0i386py313-macs2-2.2.9.1nb1.tgz
NetBSD 9.0i386py310-macs2-2.2.9.1.tgz
NetBSD 9.0i386py311-macs2-2.2.9.1.tgz
NetBSD 9.0i386py312-macs2-2.2.9.1.tgz
NetBSD 9.0i386py310-macs2-2.2.9.1.tgz
NetBSD 9.0i386py311-macs2-2.2.9.1.tgz
NetBSD 9.0i386py312-macs2-2.2.9.1.tgz
NetBSD 9.0i386py313-macs2-2.2.9.1.tgz
NetBSD 9.0sparc64py310-macs2-2.2.9.1.tgz
NetBSD 9.0sparc64py311-macs2-2.2.9.1.tgz
NetBSD 9.0sparc64py312-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py310-macs2-2.2.9.1nb1.tgz
NetBSD 9.0x86_64py311-macs2-2.2.9.1nb1.tgz
NetBSD 9.0x86_64py312-macs2-2.2.9.1nb1.tgz
NetBSD 9.0x86_64py313-macs2-2.2.9.1nb1.tgz
NetBSD 9.0x86_64py310-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py311-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py312-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py310-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py311-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py312-macs2-2.2.9.1.tgz
NetBSD 9.0x86_64py313-macs2-2.2.9.1.tgz
NetBSD 9.3x86_64py310-macs2-2.2.9.1.tgz
NetBSD 9.3x86_64py311-macs2-2.2.9.1.tgz
NetBSD 9.3x86_64py312-macs2-2.2.9.1.tgz
NetBSD 9.3x86_64py313-macs2-2.2.9.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.