SRA tools is a toolkit for using data in the INSDC Sequence Read Archives. SRAs operated by the International Nucleotide Sequence Database Collaboration house sequence reads and alignments generated by "next-gen" sequencers. SRA tools allows conversion of .sra files, which INSDC SRAs maintain, from/to other formats that the 'next-gen' sequencers generate including: * csfasta/csqual (ABI SOLiD) * fastq (and fasta for writing) * hdf5 (PacBio, reading only) * qseq (older Illumina) * sam (writing only) / bam (reading only) * sff The toolkit uses the NCBI-VDB back-end enabling seamless access to remote SRA data and local SRA files.
| OS | Architecture | Version |
|---|---|---|
| NetBSD 10.0 | aarch64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 10.0 | aarch64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 10.0 | x86_64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 10.0 | x86_64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 9.0 | aarch64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 9.0 | aarch64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 9.0 | x86_64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 9.0 | x86_64 | sra-tools-3.0.6nb2.tgz |
| NetBSD 9.3 | x86_64 | sra-tools-3.0.6nb2.tgz |
Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.
The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.
Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.
Problem reports, updates or suggestions for this package should be reported with send-pr.